PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G249800.1
Common NameB456_006G249800, LOC105800614
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 135aa    MW: 15102.9 Da    PI: 9.4026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G249800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-201768256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g+
  Gorai.006G249800.1 17 RYRGVRRRP-WGKFAAEIRDS---NrQGTRVWLGTFNTAEEAARAYDRAAYAMRGH 68
                        6********.**********4...3345**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.72E-181676No hitNo description
PfamPF008474.9E-161768IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241777IPR016177DNA-binding domain
PROSITE profilePS5103223.7091775IPR001471AP2/ERF domain
SMARTSM003806.2E-351781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-321777IPR001471AP2/ERF domain
PRINTSPR003675.9E-121829IPR001471AP2/ERF domain
PRINTSPR003675.9E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEGKSTGKEG TRSEPARYRG VRRRPWGKFA AEIRDSNRQG TRVWLGTFNT AEEAARAYDR  60
AAYAMRGHLA ILNFPHEYPM GCGDANAYCR SSSPGSSSSS SSMERGKQVF EIEYLDGNLL  120
EELLEIEEKK KKKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-261875663ATERF1
3gcc_A5e-261875663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841501e-52JX584150.1 Gossypium hirsutum clone NBRI_GE17372 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487285.14e-96PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2S9895e-96A0A0D2S989_G
STRINGVIT_07s0005g03210.t014e-43(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3682922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-29ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]